Congratualtions on your Tolly - hope its not a bucket of rust (as mine turned out to be after a couple of years!).
The fuse for the electric windows is located on the fuse/relay panel under the dash (remove the parcel shelf on the drivers side - one plastic toggle you turn 90 degrees at each end). this reveals the main row of fuses. The one for the windows (yellow, 25 amp) is way above them (and the relays) just above a small buzzer. If you still have the original fuse extractor you can manoever the fuse out by prising out the headlamp switch and peering threough the hole with a torch. the fuse extractor is needed to get a new fuse back in again - use a bit of bluetack to hold it in place.
The only ECU on this car is for the engine. Everything else is by relays.
The windows are linked through a black box fitted under the carpet under the front edge of the rear seat. I havn't yet been able to find a circuit diagram for it but it seems to use relay logic.
While your fiddling with the car, get it up on a ramp and check the condition of the door sills and adjacent floor area. Mine rotted through after I'd had it a couple of years. Seems the '97 was the worst year for this. I've plated mine over now using a MIG and some strong steel. Should outlast the rest of the car.
//Nisk