Thanks for your reply, I have had a foam kit put in the mirrors, some foam fitted inside the doors, I have had the doors adjusted, a windscreen trim fitted,and now they have ordered a mirror backing piece because they think the noise is coming from them.
The car is due to go in again on the 5th of November so I will ask them about the kit for the windows,it might be that they have already done that maybe that it is why it makes a horrible squeeking sound when you open and close them.